Scaffold Ga0207433_10001920

Overview

Basic Information

• Taxon OID: 3300027863
• Scaffold ID: Ga0207433_10001920
• Source Dataset Name: Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43587
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (89.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.611006
  • Long. (^o): -110.440182

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207433_1000192035	F104114	AGGAGG	MERLRLWRSMTQDERFTAAEKELKDAIVARYDEFADEWSLSRSVEDASPRTLAEIIIQTVENLLGLQWQLEWDYDTDADDMVWSSGATAYWFKVSDPETGYVLTHKTSGVTGERLRYFKLIETFGDAAQAVVDLADIIAEKLLVVRSQVQSLKEVQ
Ga0207433_1000192038	F086364	AGGAGG	MEREKIVAALEEAFAEISGAEYEDEPITFAEFLESFEKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVGVVFPILSIDDVVQVVEYFLRLVQQA
Ga0207433_1000192039	F069506	GGAGG	MQLTHTEEQIKQAIEATWQELLQEADAEDYSLEEYLEHYRKYWDDPDFPNDIPEIIIRAVDKLIGKPLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIVRLVIKLLDQIQSALADA
Ga0207433_1000192040	F100012	AGGAGG	MDREKVLQALREAQAEYNIEDLDRFIKQAWEEVDIIDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFVAVHPETGQCLTFLKDPVYSWESRISFSARIKSADDAVDAVMSLAELIEQNLKSRAE
Ga0207433_1000192042	F080678	GGAGG	MFVKKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSALPYNLRVEHFLKCPFLHGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFSQGR
Ga0207433_1000192043	F088087	GAGG	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0207433_1000192047	F092976	GGAGG	MMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWVDIAWDAESDHEFLLVECRSGHLFRVDEEFWLFDCDDYSDAGVYVPSED