Scaffold Ga0207433_10001422

Overview

Basic Information

• Taxon OID: 3300027863
• Scaffold ID: Ga0207433_10001422
• Source Dataset Name: Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51446
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.611006
  • Long. (^o): -110.440182

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F029929	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207433_1000142215	F029929	N/A	MLLVLLNLPNFHQSVNAELYLWLLEEQKKRDARSIQDVIREILREAKRKAERHG
Ga0207433_1000142237	F006925	AGGCGG	MAEVSVLEYFGREAELRKKWMLMWESLGHRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNH
Ga0207433_1000142246	F008219	AGG	MPKYLVEIILVVKAKNPQEAKKIADYIIDLPIPDKNIENAIETMRYEEIVQIKNPRA