NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209701_10014535

Scaffold Ga0209701_10014535


Overview

Basic Information
Taxon OID3300027862 Open in IMG/M
Scaffold IDGa0209701_10014535 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5162
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020869Metagenome221Y
F028601Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209701_100145357F020869N/AMVCPACNTEFPHGTVFCSRCHVTLVADLAEADEMVEKAYPGSALVQLWRGEDAALHASILEALSEANIPFYEQPLGSGPSARPIDALLDHAHPRFGFEVAVLSSNLAEAEVILERLLKEGPVDMALTAKDATGQAKPKQRAAAPGMTISEVWSGEDESLAGFLRAALQENGIPVRVERHGQRAAVYTPPEEESRAREIIREIVEGAPPE
Ga0209701_100145358F028601N/ASSDLITAKEVLEKLLEEEPADLEIASQDGVAATEPPLVAATETHPTVEVWYGNDDRIAQFLTAAMQENEIPIHIENPGDETRIYVSASNDKRAREIVREIVESAPPA

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