Scaffold Ga0209701_10006741

Overview

Basic Information

• Taxon OID: 3300027862
• Scaffold ID: Ga0209701_10006741
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7501
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F004426	Metagenome	438	N
F013075	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209701_100067414	F004426	GAG	VHSARAVHSIVDEDLRVSTHKSIIKTLGRQYSDATQFFVELVVNSWMWGEATRVEIKISDSGSHIEYEEWGQGMDLDGLREFLTKGKTTGEGFSPKYKRPIRESYGMGSLAWLNLGRELELQVHKGRFDRTIMLTESLIDRHWAPTDQSTWKPLRVIQAPLDHDGLRIKIRSLTKKTDPGEVRRALLARANVLALRGYGPFEVFVNGEPVKPEELRGATLLPVSIATEYGKITGEVLILPISKTRAGISEAGMSVQQKHITCLQHQFFGLDQYRIHGLSRIQGWVNADFLRRLPGGNEFERDSAQWRVFEKAMRGFVRNKVLKFLRQTASRRELRSIQYLNREIAERLRRSLRRNIEILSKAIIKTKTSSKTSQSLQHTAKKENGSGHRKDRKSKTRPRDATRSVIHLKDQVLAFDIAHGGDRGQAYVETDKNGVRTVFVNMDHPMWNVEASLTPTKLRYCIRQILERSIAEDILPANPSTPEEAYSVLDALYNDALA
Ga0209701_100067415	F001047	GGAGG	MRETIFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREEKFSLAIKQFENLMVDFLRLYQPILDRLRSYREGMQKEITGLRSSLATVNGMLEVSKGIEGLAPRIQQLEANGQELDATINEKMKMANKIDDLFSRVRPFQTGSTGSMGRDSLSDVLSGMPKDLFPETPEPGNEKTRKAGARN
Ga0209701_100067419	F013075	GGAG	LPSEFLPRAHSKRLGELDVSNWKDLEAGRNASRIDPAIRGIVSSLNHKGYRTFSSCSGGHRSNLRRRYDRHESGYIAFSPPSRIPFALYLALRKKNQDFMFEAEAVIHDGNGDRRETIYTQLDWQLLDQRKPKLRYYENLFSEVEHAIESLPRRQDGHKDVLTGLLGKPHLPLVSKIVSGQMKRFTR