Scaffold Ga0209701_10005709

Overview

Basic Information

• Taxon OID: 3300027862
• Scaffold ID: Ga0209701_10005709
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8157
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005976	Metagenome	384	Y
F085527	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209701_100057094	F085527	GAGG	MVLIVILMSTIIYIWVVPAFTSQTSQDNAGAAYAEKFETVFAQFANNAVSSPETVAPCGSQDTNVGCSPSGSYLTCGGSIISPHSGDVLVPVNGACLITSIVNGNVYVSNGANLTVIGGTINGGLEVDTALVVTLTNAHVSGFTGLYNVQTVNISGSALNTSGQSICTDACGGAMYAGGRGYFSMTNTNVTGQVENEVGHNTIVNYNRVSGRLEIESADLGQIINNVVGSLDLDANGTVVIAGNTVTGATGCPANPIPGKSVCYGSNAWCGTGNNQIPSGQTLGNCVGNVEVDVRNTGATQVKFVQVYMTNIPLAATLSWKLASGNPTQCGNAQSMTCTLFPIVIPVGDMAEITMGWTAPAGAFPLPWNYIYFIFVSSHQNYVDGYLYFQKGLGMQLQSRLEQRTCPPCY
Ga0209701_100057096	F005976	N/A	MAGGLILGVSVLLVNSEIAASIFGFALGSLNVLIGVLTARAVGISIPADHAGPVNLSVDKGVIRTNIYAIGFSENKMVLRKLSSANLTVVAALILAVLGAVVAGYFGIIVGGITAFSLQEFVTQSRRDEVKRENILDSSADSDLEFSYDEIEHLQLLGNRIRVYLKDRVVRIAISRRSARILGPMLEKIIPAKILSGPVPSGKDP