NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0233415_10019926

Scaffold Ga0233415_10019926


Overview

Basic Information
Taxon OID3300027861 Open in IMG/M
Scaffold IDGa0233415_10019926 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2664
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6569Long. (o)-123.4875Alt. (m)Depth (m)100
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037230Metagenome / Metatranscriptome168Y
F051139Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0233415_100199264F037230N/AMKNLTEEYVKIDWGGICSDFDLEHGDISPEQSFEIDRALGNINEIMHAFIDQNKTKTMDYNVSLTRREHNVLMVALDHMYEHLDDMRGDLDDYEDEVTNIKRIAGVKALQKLFKQ
Ga0233415_100199267F051139N/AMQKEKLELPVKQFHQLYDLLGDILDHESETNDFNMENSDIELIEDIRTELFNQIPDEKPTETTYAFTTAISGHSVTPLKLYEVKKASLGNAGFIITNDRRSEVYCIEKGCSHLSPDQSENWNLITITNK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.