Basic Information | |
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Taxon OID | 3300027861 Open in IMG/M |
Scaffold ID | Ga0233415_10012638 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 3318 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029110 | Metagenome / Metatranscriptome | 189 | N |
F033812 | Metagenome / Metatranscriptome | 176 | N |
Protein ID | Family | RBS | Sequence |
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Ga0233415_100126381 | F029110 | N/A | MNQKISELLKENASNVANSETGSKKDIGGKKEVSKAWKEIQKKIKKIDAKF |
Ga0233415_100126382 | F033812 | N/A | MEIGKQPTEQLLEFCFKTLNKALFEMSQNKAESDRKVLANILMNDLNEKFFRLDHQEVTQAFHRGVREGEEFSINPRTWFKWLNKQKLKANKLRIENSQEGERLQIESKCQQIDKEEVLREWLEVCLVELYELHVENEKYSFVGITRVFKWLEKNNLIHVSNQDKVKLFNEVQEEIIARKKFVHNKKKIFDPRIMCREKAIKKQFGKWKIAKFDLRKEIYKIIGHEPKD |
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