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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027861 Open in IMG/M |
| Scaffold ID | Ga0233415_10002324 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8080 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000497 | Metagenome | 1075 | Y |
| F018451 | Metagenome | 235 | Y |
| F026714 | Metagenome | 197 | N |
| F043088 | Metagenome | 157 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233415_1000232410 | F043088 | AGGAG | MKRLDGIYRGYSIFEKDNVWKIELEGKTITTFNKILNVDGKASCLTEIDRIKREEYHERERNVQRVDAQVKATRDGGV |
| Ga0233415_1000232411 | F018451 | GGAGG | MSKFIDVKSHNKTVLPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKI |
| Ga0233415_1000232414 | F000497 | N/A | MKKIENKSDVKIVENKISLSHREISAKKLLFRLTNNKRSKSKSFSIYEKAKFSTNVELAYNNSYRKIDVDYDTTFNNRFKKVNLLIDVPQYLDKAKKSLYLDLLNSNLEFIKNNKVSQEIIENQNYFTKLVNSL |
| Ga0233415_100023249 | F026714 | AGGAG | MASTYKKLTIYLNQEQEDVLKDFDLKRIRSEQFDLLHYTVGIISSKLDDTRNKMITDVDPNKCDPATLQYSSKTIG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |