NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233415_10001832

Scaffold Ga0233415_10001832


Overview

Basic Information
Taxon OID3300027861 Open in IMG/M
Scaffold IDGa0233415_10001832 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)9165
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6569Long. (o)-123.4875Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011718Metagenome288Y
F053639Metagenome141N
F088918Metagenome / Metatranscriptome109N
F099146Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0233415_1000183210F099146N/AMRASTFICTNIEEIEMVKDENEKLNLPSPQPLPKPTYEESVGWFHIEDVTRAYTRNINNRAVASLVFSDGSYMDVKMTSEMEGMLDVLFRNTL
Ga0233415_1000183211F088918N/AMAYKRKFKLTITDEVYEKMQSRNQLWTREAFDQSEELAGQFKDNIIYMCEKKGVKITEMVRWLNEMGLKFQIRRLYKWGEVHAIYPTLIEITFFSKYFELDPGRMVSKDLRAVDRLKGVSKKNI
Ga0233415_100018324F053639N/AMSLLRDTNNNLSSKRVAGYAVLSVVLCAFVGDLFEKLEINESVANTLIMSAATLLGIGTFEKKH
Ga0233415_100018329F011718N/AMGVIVAWKGCGDTSGKPVTTIIEKPIPTIEYVDRWRTDTVRFVSKEFVTIRDTITSEIIVSRLDTLFLVDTISIVEAWLTEITKYDTLIDQKNASIQLNWQNYQNRTENLKVTYTPKKVVGAKFALGVHGNAGLISDFKSRYVPLMGVGLQATVKRGYYGIDYGFNGDHYIGVRVGRNFISR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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