Scaffold Ga0233415_10001717

Overview

Basic Information

• Taxon OID: 3300027861
• Scaffold ID: Ga0233415_10001717
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 9484
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025968	Metagenome / Metatranscriptome	199	Y
F033811	Metagenome / Metatranscriptome	176	N
F048639	Metagenome	148	Y
F053982	Metagenome	140	N
F054452	Metagenome / Metatranscriptome	140	N
F061389	Metagenome / Metatranscriptome	132	Y
F066285	Metagenome / Metatranscriptome	127	N
F079390	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233415_1000171711	F054452	N/A	MSDELKMSLLKELMFGVDVWDHEHHEEIMFLHDFGLVKVYDRDLQFTATTEDGLSELERLIKLYFVFLN
Ga0233415_1000171714	F079390	N/A	MDKPKNLKDLKKRLQPFVNMDNQVRLSDEATVTNVGQMINAHLEVLEANSGNKTFMPYYDRLITLLTVLEAGWE
Ga0233415_1000171717	F053982	AGGA	MVKKNKMKRKQRMHYYGILATYNPYDDTWYAFYRDDMSDYFTDRNSVDSGKGKDALSAMNDYLSKKITSAFS
Ga0233415_1000171719	F048639	N/A	MQSAMTETEECYYNAYQLLVGETDYDKLAEQEVFYLPENHEDPEVTIRYYESVEEYEMCNQIIKSNDI
Ga0233415_1000171720	F025968	N/A	FTPHKLMMNPQQHVNTVLERCFEVYPPKGKRHRNFFKNLVSKGSMPENMASMITKIIEDPNCVYIVKADGTLKILE
Ga0233415_100017176	F033811	N/A	METNIAQAFIEAIDYSHVKHIIRSNKSIKAHWGGVTPSISDLKRVITNMWTRVSKHESAEDCVNGIVMIKDGKKVRIDFLYLSYSSQMEESQQCNEEDCSQDSEREIESS
Ga0233415_100017177	F061389	N/A	MTPGTVFNLKTHEDREDIEIFLCEDSDEEGKEFWLSKGFVLGEFEIDYEPLCWTEDLFLI
Ga0233415_100017178	F066285	N/A	MNKKSWNVVYFNRPDVHKNLVWSDGKRYFDGFLGSDNSVYRKTSGTPVAEPNAVYWMERPLRTLDDQE