Basic Information | |
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Taxon OID | 3300027861 Open in IMG/M |
Scaffold ID | Ga0233415_10000031 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 62722 |
Total Scaffold Genes | 106 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (11.32%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018478 | Metagenome | 235 | Y |
F025412 | Metagenome | 202 | Y |
F027524 | Metagenome | 194 | N |
F042344 | Metagenome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0233415_10000031103 | F027524 | N/A | VNEEFIKEKRQVIETACKNICKHSDIWRDLSQEVNIYFLTNALPENLNKIDGFIFVVAYKMFHFSGSSFNRLHFDNVLIESTELDYLKEIDIPYMDGNVYKEYVEQIKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRTTAKERMESIYNKLRKNNK |
Ga0233415_10000031104 | F025412 | N/A | MNYRELKWGALKSYGTKLGIDTKGMTKELLLEWLDAMPDVAHGIEELEPFKGIKQHHPLFDEIKDYLPYLKAFKKLKAVSPVPEVNLAIATLFLKYIEEQKNIRINLGCGRCKHSYYERMIAGYNKLVDEYGGGERI |
Ga0233415_1000003119 | F042344 | N/A | MERLFKSGIVTTMIGLTILCVAVVLYISKEHTETEAGAVGALALLLLRSKDSLIGLGPKK |
Ga0233415_1000003152 | F018478 | AGAAG | MIKDFKEMDWSKNYTYKDQKIYISFETKKYILCSFYESGKGKFKLDKTEFYA |
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