NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10032953

Scaffold Ga0209611_10032953


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10032953 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4936
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079505Metagenome115Y
F104311Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_100329533F079505AGGMSQPHFGAKXENATHTPKDGKMESFGTPENSENDLRGQISLSWRVLYINEKLLKRRCPKWPRIGHLDICSPSYGQKKGRESNCQFDSRPLKVRNRPLLNVASRSATWRWKALDESYNFGLDLVSIXVWGEELWPSKVPGLQPGTISGLQLGSPGKKNHSDVASAVRCNEYYMGEGGGFPXVQAVVSQVVQVARGLSQHPRVFSNAN
Ga0209611_100329534F104311N/AMRIPCHENPSLPLKIFQKPSKILTRFQQYMYIRHLVILHYCNVTWLSISFSIYGRTWTFXGFFNIGNTLPKLRQVSEIAYNSDPNAIHGGRITSSDAYHKATEWFHYHMNGLVLFKRYIRSLYTLELSVLIAFSLLITIGEVCMLKSETSLLGVNNVIEXELLSPFDNSRFFHSLFKACFIVGHVI

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