NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10018995

Scaffold Ga0209611_10018995


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10018995 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8342
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003475Metagenome484Y
F026776Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_100189952F026776GAGGVAPRISATRQVIQTDELAFGSSPITKARGARIFMPQSFHPLNTEEKHTLLTRGEETTTPQVVRASNSHVPGVHVHQKNTQFSTDQLMECQLQMREVAQMFVSTPLFSFQDLELSTKDIIVVLEDTLNTTSSLDPHATKVPSNTLEKHSIGSRVRDGVRNPVTNSNMAKLVGFPTFDSTFTYQKGVKNTSLVDLLLSKGVVDIHFFHKVFHSFPKVVPSERISITTRVAIVDNTGLVIQVEGQTPKVVLLDIGAQLVIFGVQFAKKTGMHDSKLRKSMW
Ga0209611_100189954F003475N/AMGNTLPKLHQIRKIAYNNSPNVIHGRTITLSDAYHKATECFHHHMNGLVLFKRYTWSLDTLELNVLIALLFFITIGEVFMFKFETSLLGVNNVIE

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