NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10015616

Scaffold Ga0209611_10015616


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10015616 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9869
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Marchantiophyta → Marchantiopsida → Marchantiidae → Marchantiales → Marchantiaceae → Marchantia → Marchantia polymorpha → Marchantia polymorpha subsp. ruderalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028066Metagenome192Y
F082045Metagenome / Metatranscriptome113Y
F093126Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_1001561612F028066N/AMWSGGVIDTRDGHDLVNVIFQSRHLNRIMAGLEMFGPFRDLHRKDREDFVMNAIRAIGNFPIHEERL
Ga0209611_1001561613F082045N/AMQGNLFILESWMEVATWVEEIQLLAMEITKGKPCRIGCTIQRMKQHHENHKHESLYLTPSLLLDITCNPRHELELDLWKSKKIRKKTL
Ga0209611_100156163F093126GGAGGLTLSIVHRPGRRHGNVDGFTRAYKGVGDVSEDDDFPDATIMSINVEEAPKEYQKMIQYLDGMRFQDGATKVVRTRIAHKSQNYSMIGNQLYFEGRDGVL

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