NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10011302

Scaffold Ga0209611_10011302


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10011302 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12909
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003475Metagenome484Y
F027081Metagenome195Y
F086501Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_1001130210F086501N/AMVREYVLSIPHNFSLTPKFVTSFCPSYVATQEASVAPRVFATRHVIQTDGLASGSSPITKAKGARVVMPQSCRPLNMEEERTLLARGEETTTPQAVRASNSRVLGVHVH
Ga0209611_1001130211F027081N/AMAILPTKLVSVTFLPRISFVIIVGKRDIRNLFVLPSSKSGSNSDYNDKICHHLPLSFNQKPRHLNLSLRFCPPKVIPTIMLRRRSTMLTKGRCFKPMQFKFRLYKMNLNH
Ga0209611_100113022F003475N/AMGNTLPKLHQVSEIAYNSDPNVIHGRTITLSDAYHKVTEWFHHHMNDLVLFKKYTQSLDILELSVFIAFSLHITIGEVCMLKSETLLLGVNNVIE

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