NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10010018

Scaffold Ga0209611_10010018


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10010018 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14092
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003475Metagenome484Y
F009583Metagenome / Metatranscriptome315Y
F027081Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_1001001812F027081N/AMAILPTKLMSATFLPKISFVIIVRKRDIKKLFVLPSSRNGSNFDYHSKIYQHLLMSLNQKPKHLSLPFRLRPPRVIPIKMLKRKSTMLKRGRCSSPCNSSSDSIK
Ga0209611_1001001815F009583N/ALSSNSHTTVEKVALNFFKKIVHGLSLHFSIFLEELLTSMVYMGVEVTACSGIYGDGVKVGVAIGVPH
Ga0209611_100100187F003475GAGGMENTLPKLHQVSGITYNSGPNVTHGRTVTSSDAYHKVTEWFHHHMNGLVLFKRYIRSLDTLELSILIAFSLLITIGKVCMLKSETSLLGVNNVIE

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