Scaffold Ga0209611_10005172

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10005172
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22034
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012093	Metagenome	283	Y
F015049	Metagenome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000517226	F015049	N/A	MTSTPIYTMEVSSFSRRIEKFSGRLDTISLREFKATFSTVVYELEFKYGANYIEAFAFKQLARYVHYEALDVYEQHSSRILGITLIPNPVYVPAIATAFQAALQIAITHHGTVPNNPDPVPTLVNLSPQQLIVAIANIFPTIDAPAFANLVRELFRVFELEFLIKSSEKILRFTTFFRQKDETLKMLYRRLLKLKEDTHTITDLEVAH
Ga0209611_1000517229	F012093	N/A	VGTPLFSFQDLKQNIKDIIAVIKDTLNTTSSPLPIPNPHAIGVPSNTLKRHSIGSHVVDGVHNLVTSFNMVKLVGFPTSDSIFTYQKGVQNTSFVDLLLNKGVVDNHSFHKVFHSFLKVVPSERTSIATGITIVNNTELTI