Scaffold Ga0209611_10003719

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10003719
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26353
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003475	Metagenome	484	Y
F088117	Metagenome	109	Y
F091207	Metagenome	107	Y
F093124	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000371911	F093124	N/A	VDWETDGHHLGYIPLDLHGNHSPMAHHCMFKEAHTISYIQQANHKWIEGDEKETIYTQVIKSLRVVPTNIQHGPEVLQRFKVAHEPLVKALFSFENMEGHGKPIKPIFHQLITGMPFKEGITLLKLFGGIGTTFEALLQSGMVVWRYFDIDIDPIIRQVTTLKMMEFIVRFPQ
Ga0209611_1000371919	F088117	GAG	MENWNDIIVEEDWASKTGLVPLFLMGWEALMLDVMLEFLNIFLIKGADIYFGHKDKVYAINKKLIIDVFGMCVEGYVEEPKG
Ga0209611_100037194	F003475	AGG	MGNTLPKLHQVIGIAYNNGPNAIHGRTITSSNAYHKVTEWFLHHMNNLVLFRKYIRSLDILELSVLIAFSLLITIGEVCMFKFETSSLGVNNVIR
Ga0209611_100037199	F091207	GGA	VYHHASATWDEPSPKERKRAMGFQINTISHTKVTRLECNALLGRGMDLNSLTWLVVTYVLFQMYTTLALIQLACSSIDANTWHLDQVHLPIFNILHFTFSDVGEEVPCNLIQVVSNTLGSTSTFGEIIITFYESMQLDSGEPNH