NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10002682

Scaffold Ga0209611_10002682


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10002682 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31234
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (42.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004020Metagenome456Y
F048722Metagenome147Y
F057063Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_1000268210F048722N/AMNISDYSIKVKNLVDVLASIGAPIDDEDLMAVTLNGLGKNCS
Ga0209611_1000268211F004020N/AMEDHKKVLSNQILIEVEIEVVKLHFEVDTEVRMVDIINMKVKFMEVDKETLEEEEVKEIVEVVVEVIEVNNQITIQISTTMGNLGPWRRTVIKRSMMHEMESCNKGIMH
Ga0209611_1000268222F057063GAGMSSPSGEEIPEELLTQENRELNLVRRFDFWTIQNGPQRGAVILRFLGFGIVRIVDIDPDQARMGDIVMEVSHSGFYTSARVWVSVTDGARGWAWTSELQDSFYFTSYLA

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