Scaffold Ga0209611_10000824

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10000824
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49292
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (54.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009583	Metagenome / Metatranscriptome	315	Y
F029967	Metagenome / Metatranscriptome	186	Y
F044864	Metagenome / Metatranscriptome	153	Y
F054513	Metagenome	139	Y
F057065	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_100008242	F029967	N/A	LGVYRVQDQTKEKFVINVNQVEMQCHHFYITRHATKAANAAAAYQAKYKIVDTDMG
Ga0209611_1000082422	F044864	N/A	MRRPLIGGEDFKTSIGQREQTQGKDMEAYQGREEYLGLGEGERRRMNV
Ga0209611_1000082437	F009583	N/A	VEKVALNSLKEVVPGLPLNFSILPEELLTSMVYMGAEVTTCNGVYGDGVKVGAAIGVPH
Ga0209611_1000082442	F054513	N/A	LLPLWELGKTDIFLMSFFPTIITKEILRKNVALTSFVGRIATIVARR
Ga0209611_1000082445	F057065	GGA	MAHHCMLKEAHTISYIQQANHEWIEGNEEEIAYAQATESLKVVPIDIQHGPKVLQRFKVAHKPLVKALSNFESMESHGEPIKPLLRQLITWTPPKEGITLLELFGGISTGLKALL