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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027860 Open in IMG/M |
| Scaffold ID | Ga0209611_10000511 Open in IMG/M |
| Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58423 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (32.31%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Dicranidae → Pseudoditrichales → Ditrichaceae → Ceratodon → Ceratodon purpureus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009583 | Metagenome / Metatranscriptome | 315 | Y |
| F012093 | Metagenome | 283 | Y |
| F023023 | Metagenome | 211 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209611_1000051159 | F009583 | N/A | LSSNSHTIVEKIVLNSLKKIVPNLPLNFSIFLEELLTSMVYMGVKVTACSGIYGDGAKADVATGIPH |
| Ga0209611_1000051163 | F012093 | N/A | MECQLQMCEVAQKLMSTPLFSFQDLKLSTRDMIVILEDTLNTTSSPLPIPDPHAIEVPSDTLERHLISSHVEDGAHNLVISSSMAKLVGFPTFDFTFTYQKGVKNTSLRDFLFNKGVVDNHSLHKVFHSFSKVVPSERTSIATRVAIVNNIGSVIQVGGHTPRVVLLDTSAQLVILGV |
| Ga0209611_1000051165 | F023023 | GAG | MAKVATLLRRSVRMKFTLSKLRLGSPPVSQPHFGQVWGXSPTLGKVGGWESSGTPECSELDSKRKNTSHWGVLGVIGKVLKHRYRKCPRIGNSNICSPSYGQKKVRESNWQFDSRPLKVRNRPLPDVRFECATWRWKDLDEGYNFGLDLIAIQLCSRELWXFKVPGVSPGQFQDSILGVPGICAIRM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |