Scaffold Ga0209611_10000270

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10000270
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70149
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (45.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002736	Metagenome / Metatranscriptome	533	Y
F004020	Metagenome	456	Y
F024239	Metagenome / Metatranscriptome	206	Y
F048722	Metagenome	147	Y
F062375	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000027020	F048722	N/A	MNISDYSTKVKNLVDVLASIGAPIDDEDLMAVTLNGFGKDYS
Ga0209611_1000027021	F004020	N/A	MEDHKKVFSTQILIEVEVIKFHFEVDTEVRMVDIINMKVKLMEVNEETLEEKEVKEVVKVVMEVIEVNNQIAIQIATIEGNMGTWRRTVIKGRMMHEMESYNKGIMHQLAIKVMSNCL
Ga0209611_1000027024	F062375	GGAG	VLGRTTDNTDTVDSPWPGLGGSHHLPPYSILCGWPQSLHPNGFLSYNSQVGIPKSHQMGLPRLWNPITLQANLGSRCNLKQNCSSCRELSNDMLHTLCSQVNWVDSGLFLVGSQIGNLTPDPSFGHNLCFRCPNEQCEPILDI
Ga0209611_1000027038	F024239	AGG	MEVNEETLEEEEVEEVVKVVVEIIDINNQITIQIATVVGNLGTWRRIVIKGNMMHEMENYKGIMHQLAIKVINNCL
Ga0209611_1000027041	F002736	GGAG	MSSICAQNFSSIGDDHKELSLSKGTNFKIETETLNAWIFLNTYPNDMKFLSHIYSFMIYTIPKLQIQKSSNKGYMTKKPDLA