Scaffold Ga0209611_10000181

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10000181
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79030
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029967	Metagenome / Metatranscriptome	186	Y
F032509	Metagenome	179	Y
F083596	Metagenome / Metatranscriptome	112	Y
F100227	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_100001818	F032509	GAG	MNTQNPGSPNRDGFGTPLWESQEKVPFGCKWDGEMQRILYGGKWWLPPNPGHGESSEFKVACDLSQHQKCVE
Ga0209611_1000018193	F029967	GGTGG	LGVYRVQGQTQEEFVAIVVQVEMQRRHFYTARHAAKAANATAAYRAKHGIVDTDMG
Ga0209611_1000018194	F100227	GAG	VLGLNAWGVGSVPRDATSRMEKDEDLQGMIRSTRCVYARQLKTAWDVKNWDQESSKTSRTKQLADVLNFHESKMIHGR
Ga0209611_1000018197	F083596	AGG	MARGRRLKKSANWELEMSKENGTTSDDAILLPNVVVSDEAILLPNVVVSDEADAEPHVTAIVEQNMAAEDEVIGDQSSVATNQPISEQNGALS