Scaffold Ga0209611_10000012

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10000012
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 192141
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (25.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012093	Metagenome	283	Y
F027081	Metagenome	195	Y
F050097	Metagenome	145	Y
F062375	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000001211	F050097	N/A	MNNKNKIVNLGYRLASIIIELMLFLPLNIYIYIYY
Ga0209611_10000012146	F062375	GGAG	VLGRATGDTDTQDSPRPGLGGSHHLPPYSILYSSPRRLHPNGYFSRDSRVGVPKSRQMGLPGLWSPITLRADLESXCGLKQSCSSCRELSNAVSHSRIGHREEVDSRLFVVGNQTGSSTPDPSFGHNLCFRCSNEPSEPILDIYALRAFQXYKERHKPLSFDP
Ga0209611_10000012189	F012093	N/A	VSTPLFSFQDSKLSTRDIIAILKDTLNITSSPLPIPDPHAIKVPSNTLQRHSIGSRVIDDVRNLVTSFSMAKLVGSPTFDSTFTYQKGAKSTSLVDLLLSKGVMDSHFLHKVFHSFPKVVPSERTSIATRVAIIDNTKSIIQVEGHIPKVVLLDTSAQLVILGV
Ga0209611_10000012190	F027081	N/A	MAIMPIKLVSATFIPRISFMIIMGKRNIRKLFVLPNSQNGSNSDYHNKIYQHISSPLNQKLRHLSLPLKLSPPKVIPVKMLRRRSTMLIKGRCFKPMPFKFKFCKMNRIIKGLTC