Scaffold Ga0209503_10140655

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10140655
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1143
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F044794	Metagenome	154	N
F067200	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_101406551	F044794	GAG	LDVYGDEKGRIMAKKNPLRTRLLKEYARLSKIAVREPRNGKEMFVRMRWEKIRNILWRRYDYMQSL
Ga0209503_101406552	F067200	N/A	MKTETIMPKFRSYRKFKPEWKYEKKCCKECDREYLTDNMMGAEETKTYVWYCIRCYNFTR
Ga0209503_101406554	F001689	AGGAG	MKLKKEYEMTFKEGFRLGVRLTRAKAYIENARDAKRLDDEAMAKLFMEFAQDWSELARNAGRKFTPTAAHDPEQSAFDFGDIEMQEHLSKLPFKLKETG