Scaffold Ga0209503_10017092

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10017092
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3217
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F033839	Metagenome	176	N
F038198	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_100170922	F038198	N/A	MTLEKTTLKNVKVTINFDIDLDTLKRYLQTKEIDKDDVMAIYDMICTQSNRLNEQCEPENIRAFFDIDPETLNLIEDEVRKSIKFKTSFHPHLRRIK
Ga0209503_100170924	F013777	AGGAGG	MWGPTSIDHFKNLHDHYLEKKPIVHAYATPYQNDPTNNPAAPWSKLMHEKRDLERMAFKSYIHPQGDFQNGYYDICDIEKGTFDCNNMNLGEVYPVILYAHHETMLTVGCVVKTSDHPDVVTGEEQLALWIYYPSAENIESFDTASGHIYKD
Ga0209503_100170927	F033839	N/A	MNNMSPITRACLTVGAGVIIGIIPVFMIINTLSTTAVKLCDRYGSNYTIVDLDTPFGTIKRCVAKD