Scaffold Ga0209503_10013394

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10013394
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3629
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010357	Metagenome / Metatranscriptome	305	N
F015604	Metagenome / Metatranscriptome	253	Y
F081227	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_100133943	F081227	GAGG	MSSLVLQELFENKIQEASEMSNEELAKELKGSVSNSNGMMSRDTMIDIVAMKLSNAELRDEL
Ga0209503_100133945	F015604	GAGG	MNNKILQQKINRRKSLIADLPFDSEGVTFDNPSITVEQGMARATRLALKGAENLNLYRLRGGK
Ga0209503_100133946	F010357	GGTGG	MYIDVKYSFRPNPKCRAEVVRYVETMYHFKEVKSKCGQTDVNGGRVLCDACCELADNIERSKYGY