Scaffold Ga0209503

Basic Information
Taxon OID	3300027859 Open in IMG/M
Scaffold ID	Ga0209503_10011828 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027859 Open in IMG/M

Scaffold ID

Ga0209503_10011828 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3860
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3860

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-17.283

Long. (^o)

2.9768

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F018289	Metagenome	236	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1001182810	F103094	AGGAG	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWQDDRAITRSH
Ga0209503_1001182811	F006217	AGGA	MIELLLAVIEEPNQFHRYCMDKHEHWTGRAACVQELRHAQRKLEVEELRQFLKDNPHYKYPGMALPNGKIKPLDVCWGSDRTYY
Ga0209503_100118282	F052260	AGGAGG	MFVLLATKPLNDGTKGFRFNFFGKKGIVRRRKLQSNGIKFTKGDCMNAYHLGKTTVYTEQSVNKTTARKFCHLAG
Ga0209503_100118283	F018289	AGGAGG	MTQFTKQQLNTLRKQMQNSLSMFANKTDDLTIEVGNCSYNGGEATFKVKVLLKGAKTRQQQDLEFYAELHKLDLTKTEKLMGEDMQLTGYNSRARKKPWILKRLRDGAEFVADQNLIEKFYKKEETNA
Ga0209503_100118284	F004493	AGAAGG	MRNSVTKNNALDFTNDEWNQLIEGNGLLIMWFIEWNKKVENGKDLQYYQTLQIQDFFKLKYNQSAGCDPWPMKDAKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHVVRMD
Ga0209503_100118287	F053978	GAGG	MHINETTKQMIREIVVELFKEVASKQTFGVSDEVLQLDEHLHDWTGRKIDNYKVKVYGATLEERY
Ga0209503_100118289	F005813	AGGAG	MKLYRNSNGVWAGTQADARKMCGKAYTPVDVPVDKSSLLMFLNANKVGGGAIVDSQNITSEATELNMGAMSWIRWSYDCMCRGQYDDAKEMLRKGLELARKEKTDEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209503_10011828

Overview

Ecosystem & Geography

Associated Families

Sequences