Scaffold Ga0209503_10008056

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10008056
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4694
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F060814	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_100080561	F060814	N/A	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEKQIRKAEAFIESITNQGILVDEILIGPTDFLASENFYEVMPQLEYIINDNSPILAFVSTLIDGDIVRFCDWITSRINTDTEIEIGIATNPHKFYEEKYVQHIKDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKEFDTILDFIPSVSRSHKSNIILA
Ga0209503_100080562	F042905	AGAAGG	MKLKLNNTYAGYYTYDPELSPINQDFLRTEINLDILHGCDQMCPGCFIPRKNFTKADDLEILYNLLVNGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISSIGFTSTLLQPYWIIKEKLDKIWSLYQNIKRIPDIDFKIVLDVDKYLDGELDEWYKKLKLFEHGSVQFRVNYYKGIFDRISYNELCEKTFEDFNAPVVITPSFLTDRNARGKVKQHLANFREDLLNQNIDEKWRNYYTFFDAKFNGLGCQNYSFYGGKLYINPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLTSCVALKEYMHAPH
Ga0209503_100080565	F040106	GAGG	MTMQKSYCKQMRYSGPESLAPSDAYKFDVLIQMEVLAGCDHGCLGCFVDKNIDPDMNQAIINRAKELADGVKRTGLNLREFVIGPTDFFTAENTKAVLNNSAVQDIMRDHTGARIAAPAKFDKVSMEKLKEIFAVLDDEDKYRRDMIIEFIMPIGRVHEMLDDDDYYNEVMKKVEFFKNDTPKQMDWSWTLQASNVVGKKIDKETYNRIIDKSVNEYETIVEMNPAFSRARNQLIKRHNLFAWNDFLGKVVDKDNASETVMSMANLYCNSINFIGLTVVPGENGPTTHLNVMLHEQAFFLENKNLDVTGLSFEEILQRKNELVLKGINKSSQVKDCSDCQFAIACANRLVFEAQDSLNVNGCVMNKEVLDLYNPYDFTWNDDAERAMA