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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027859 Open in IMG/M |
| Scaffold ID | Ga0209503_10005357 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5839 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (100.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -17.283 | Long. (o) | 2.9768 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004493 | Metagenome | 436 | Y |
| F006217 | Metagenome | 378 | Y |
| F015102 | Metagenome / Metatranscriptome | 257 | Y |
| F027536 | Metagenome | 194 | Y |
| F029123 | Metagenome | 189 | Y |
| F053978 | Metagenome | 140 | Y |
| F103094 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209503_1000535712 | F053978 | GGAGG | MQINEPTKQMIREIVVELFKEVASKQTFGVSDEVIQLDEHLHDFVGAKIDKYKVNVYGVTLQEGL |
| Ga0209503_1000535715 | F004493 | GGA | MQNSVTKNNALDFTNDEWNQLIQGNGLLIMWFIEWNQKDKDNPLLIQDFFKLKYNQSAGCDPWPMKDSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHVVRMD |
| Ga0209503_100053573 | F015102 | GGA | MESEDGKNPNTPFDDATHWVGNLPRKDTDSTKRSIKRRSWWQIKSDILRKKLGMETKWED |
| Ga0209503_100053575 | F027536 | GGAGG | MQVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYEQDKQEGVLWVPNF |
| Ga0209503_100053576 | F029123 | AGGAG | MSYEVWFGQKGKWFGYHSFKHKMDAQRYEERYKKVFPNLTVEIRRREHAS |
| Ga0209503_100053577 | F006217 | AGGA | MIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYRYPGMALPNGAIKPLDVCWGSDKTYYIGSDKVKRSKC |
| Ga0209503_100053578 | F103094 | AGGAG | MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAVTLSH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |