Scaffold Ga0209503

Basic Information
Taxon OID	3300027859 Open in IMG/M
Scaffold ID	Ga0209503_10003464 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027859 Open in IMG/M

Scaffold ID

Ga0209503_10003464 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7414
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (100.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7414

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (100.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-17.283

Long. (^o)

2.9768

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F040582	Metagenome	161	Y
F052546	Metagenome	142	Y
F053980	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000346413	F053980	GGAG	MNGYELLAEYEKQIKECFTVPNNILPEEFQDNRMVYDQVSLATLEKKCDERDRSTLSSFEEEAIERAKRVQIYADQVQRGKEIEYLPMQ
Ga0209503_1000346415	F018906	GAGG	MKTCKVNPLKLNETRFEAETHKKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILKYPLGTDGEITAELIYDTQINKDLGCVDVIGWRDFGEVADILQQIRNYNTGEYMINE
Ga0209503_1000346416	F012114	AGGAGG	MSNNNCMMPEVRKNVWVVYDTQGNRIGEVGAMTEIEARQKVALHVMIPFRLSHVEE
Ga0209503_1000346418	F040582	GGAGG	MGIISMDFQSVVIGYAIGIALMWSLNETLYGDNNEQRTETDSERTRPRYDRRYHMLYGDSPE
Ga0209503_100034643	F052546	GAGG	MIIRYYNTAAILILTSIIFSSCAMIPNRNSITLNKTIELDERAIEKLNVGVRLEWIR
Ga0209503_100034648	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLVNAEKKGNDLRWHERGDFYKDGNKLDLEYIDNILWACRSILQEGGKLPNMWAYTHIYDPKLSRILGKYITMYASVHNDEDVKKAKAAGFTLFAWCDSDEKIAPKRPRGKKKADQWRSDLPKLVVLGDDKYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGLANVLFPSH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209503_10003464

Overview

Ecosystem & Geography

Associated Families

Sequences