Scaffold Ga0209503

Basic Information
Taxon OID	3300027859 Open in IMG/M
Scaffold ID	Ga0209503_10002336 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027859 Open in IMG/M

Scaffold ID

Ga0209503_10002336 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9323
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (52.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9323

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (52.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-17.283

Long. (^o)

2.9768

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F003365	Metagenome / Metatranscriptome	491	Y
F004376	Metagenome / Metatranscriptome	441	Y
F005019	Metagenome	415	Y
F008307	Metagenome / Metatranscriptome	335	Y
F057681	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000233615	F008307	AGTAG	MTKVIKTSSIELAADFEEIFDGANVEEATKKAHNQKMPSEFAKVNITEHKLISANIKVIGEVNDELKK
Ga0209503_1000233622	F003365	N/A	MVSMLKKIGKEWTKKEEGGMFTADHLSPSQLNKNIDQWFFDYCKLTAAERKKLKPNLKMIFGGLAGQAMQDIITENLTLEQVMKGKK
Ga0209503_1000233624	F002586	AGG	MAKVNLDPNDVELAYTIAQKRFIGNLRMNKGFSYGYDKNLKNQLYDGFLGALGEVSWAKWTNSYHNASYTDNLQRYEDSDFQDNIEIRTQNKKSYNFLLIRPGEKKGKYILIIKNDDKDFNFNIIGSFIYNDNLPPEKLSNFGYDHRPAAYKIELNELTPLEDNERQDKF
Ga0209503_1000233627	F005019	N/A	MNIYGDYRICCKCQMKADVVERGKDYCADCWFKYFSGETLEQYEKRIKQLDELKKNG
Ga0209503_1000233632	F004376	AGGAGG	MKCLDCGCDEGTLLKEFDNEKNYSWFELSEMTEVCVSCGSENIKLDKEG
Ga0209503_1000233633	F057681	N/A	MKKYTKKLFLDYASAFDYYDEMKETMQSWSLKDFHKFYDFTHKDWESGKEIKYKEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209503_10002336

Overview

Ecosystem & Geography

Associated Families

Sequences