Scaffold Ga0209503_10000753

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10000753
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18091
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (6.98%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002344	Metagenome / Metatranscriptome	568	Y
F005351	Metagenome / Metatranscriptome	403	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F086293	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000075311	F009959	N/A	MVLTQIFVQLITKIMTEQEVIDKVCDRVVNTIYNELDYYMFAELGYTETNDKYVEDADMLIIKVIKELNK
Ga0209503_1000075314	F086293	N/A	MNKIIIITSVVASGLLGYNAKKDGTRVEYALDNVQYIKSWVHEDVNNGVIDSAYAEYYLNSLNQTEDLLIEELTN
Ga0209503_1000075315	F050305	N/A	MNNLNTTIDKIAMSEFGIHYYQLGDNEQQWCHDEMVNNKEWLKKDWEKPLWSMADKWKAGLPIYKTYINE
Ga0209503_1000075316	F005351	N/A	MYNVNNPSNWSWSKAFAEMDKTVHQAEMTQQIINHLHNYDGGKKVFKQLDKENQEEMYNILTQIL
Ga0209503_100007534	F002344	N/A	MLYDRLKPHIKDKLKSQAEEYSVSINSVFNTLKQKHSYSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLTK