Scaffold Ga0209503_10000446

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10000446
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26217
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (41.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001724	Metagenome / Metatranscriptome	645	Y
F030401	Metagenome	185	Y
F043348	Metagenome	156	N
F072256	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000044623	F043348	N/A	MLCLAHKVYFAMSCTLADKNRRTKMLRSELAGINDPFELLAEALADNERLRHIINTHDCHKGKP
Ga0209503_1000044625	F030401	GGA	MERIFNGSAKRTLQKMVNKGLMKVSDLDTPSEGWFIAMGYDRENKTGKWKRLLRTKCGATPSLRLEQIPKWTNTLTGKVTFDPVEYEKQN
Ga0209503_1000044626	F072256	N/A	MKSKIKDILIRDPFVRFDPEPHKYYDLKRKKYVARSISEVIKETTYVSKAMEKAAVRGTAIHEAAQIWCETKDKTLALAYAKDYAKWVEHLINYRMWNTWECVVNELRMIDRKRDIAGSCDVILQHKDTGVLCLADFKTQEVYKKKNHRLQMGGYVSLLYQNYPQIELWSCRVIYITPDGIKTQDYNPQECMYDYEEARGLYFGKQLPF
Ga0209503_1000044639	F001724	AGG	MTEKRVMQAESSKKMKELDDEKPDYQEKITFLISTVAQGFILAWCLLVLSLGYIKLPNKLFGIDIPDQPRVDSTFAAGLLGSILGGLGISVNAAQGAKKKKKEGENSTISNSNGGVQTIIIKQPIELITT