Scaffold Ga0209503_10000407

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10000407
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27930
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003492	Metagenome / Metatranscriptome	483	Y
F015742	Metagenome / Metatranscriptome	252	Y
F016667	Metagenome / Metatranscriptome	245	Y
F100986	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000040732	F100986	GAG	MTRRKIYEHLIGTNVFGIRDKIKQFKKARRKRKNEKI
Ga0209503_1000040739	F003492	N/A	MAELLTDDIIIEKLEQDGFMEEPDGPWILEYIEEEHGGKLDNTSDYIDDKWTLKIYSESTYDSYDIYWCTHEDRPYVSQDGYYYEDYSDWSDKAVDELTSGSDVWIENHIWDDMEYDFNYRLGEWWQDVYQELFDERKEELLDSGDYYVEKED
Ga0209503_1000040743	F015742	N/A	MDSKKAYEMIKEDIVDRESAYLCTELERALDRIINYTDPLDDTMFRNIKAPAIKLLKEWH
Ga0209503_1000040746	F016667	N/A	MEMKINKNLRRVVVTLSLIGAGFVYGKQTGEQEILNRWEDRWFDSEWYDYKSIEDILYDKEWDNYLFTNND