Scaffold Ga0209503

Basic Information
Taxon OID	3300027859 Open in IMG/M
Scaffold ID	Ga0209503_10000140 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027859 Open in IMG/M

Scaffold ID

Ga0209503_10000140 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50462
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (40.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

50462

Total Scaffold Genes

106 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (40.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-17.283

Long. (^o)

2.9768

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F018189	Metagenome	236	Y
F037769	Metagenome	167	N
F087049	Metagenome	110	Y
F087060	Metagenome	110	N
F088913	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000014017	F018189	GAGG	MELSKEQMEKVIYELECNYNSKIFDDENLVEIINLFKNYLNSGEN
Ga0209503_1000014022	F087060	N/A	MTQSHTTSNDTSAKQVVRTLSGITKGKPVVTGNAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFTNDLKAALDDNEENPKIRHSENDRVHVYLSKRRVYKYSDKLIAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG
Ga0209503_1000014028	F037769	GAGG	MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPRDYENDEDFHEALLHRLHIAEHFVNINRYIDEHLDFAKAHIPPQTP
Ga0209503_1000014029	F012584	N/A	MKLKPYLPENTFILNEDSLPKEHDTDRFGKIMVFRKDVGWSVISLTDAVQFLAMKHTHWTYTPDTPHD
Ga0209503_1000014030	F016820	N/A	MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKTALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPRDIFEKCEDGFCPMPTPQTQEVS
Ga0209503_1000014034	F088913	N/A	MTVPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYVSAKIRKGIIKEVTLKQNSCGAKIPHYQVLWDHQSSPSLVSQHRIELENEVSKM
Ga0209503_100001409	F087049	AGG	MILVLAIYVGEMRMMNKELAQYINTLLAEKQREVLSKQAYLDKIDRSVEIYFTEYQEIEYELGMIYKAQKAMDYIIEEDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209503_10000140

Overview

Ecosystem & Geography

Associated Families

Sequences