Scaffold Ga0209013_10346014

Overview

Basic Information

• Taxon OID: 3300027858
• Scaffold ID: Ga0209013_10346014
• Source Dataset Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 839
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location

• Location Name: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39192
  • Long. (^o): -119.84578
  • Depth (m): 47

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011339	Metagenome	292	Y
F023451	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209013_103460142	F011339	AGAAGG	MAKHKITDWTITAVVERPDGTWYDHTITDFPEHIGITINEWLQDYKTYEEVSDEXRIRKHKTNRRFRE
Ga0209013_103460145	F023451	AGGAG	MKKQKWIGFKEPKFIGIDFDCKGNPLIEWQEALKLKIDRDTVGYDFKVVAYKKVQSCMEDEXNI