NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209013_10043595

Scaffold Ga0209013_10043595


Overview

Basic Information
Taxon OID3300027858 Open in IMG/M
Scaffold IDGa0209013_10043595 Open in IMG/M
Source Dataset NameOil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3201
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location NameCoal Oil Point, Santa Barbara, CA
CoordinatesLat. (o)34.39192Long. (o)-119.84578Alt. (m)Depth (m)47
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005351Metagenome / Metatranscriptome403Y
F103279Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209013_100435953F103279N/AMVKQAIIKFCYKAVEEKMLKVYAYCMTGIFLSIWIPAMVSVVYQMLQIYGVI
Ga0209013_100435956F005351N/AMYNPNSPSNWSWSKAFKEMEKTVNRAELEQQIINHSHNYDGGVKKFTELTKVQKDDHYEILTQIL

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