NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10001331

Scaffold Ga0209166_10001331


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10001331 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20947
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (65.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F002750Metagenome / Metatranscriptome533Y
F014492Metagenome262Y
F018221Metagenome / Metatranscriptome236Y
F047513Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000133115F047513GGAGGVSAYKAQPPWEFLLSASRNSLQSYELSRLSHAANLRKEITQLLDSWLEENSAAMLARWLMQQRERPATREHSDLAAHPAGSDERTAAPETRRKGGPTASDNFFADAAGAPPEFRARS
Ga0209166_1000133118F018221AGGAGGMGRLRGMGRGRGLLPTQREVLRDVMLAAGKYGAWMTLQELARLTRYGEASISAQLRHLRRTEHGGYAVEKRLRSGEIVSSEEHFVVWEYRLEPRRSQRRGSMPRKVVAAKGAGRRGRR
Ga0209166_1000133119F000188GAGGMSVKPELAFDVCWEVYCGAREVLESKRGMSAMDWKEATKYLWRPDFRPRLNEWVADFALAGQAALEGPDWASRLVMFRLYYLGMAPYERARHFLGLSEQSWVHWSEEVRRRCGKELLRRGMFPPRKYFCNAA
Ga0209166_1000133126F014492GGAMNALNNAQSLLAKLTQTIYLDRLLKILGVGGFIVTYMNAWRSMGFGLKLGFVFSAAAWFVGARFTKIYR
Ga0209166_1000133128F002750AGGAGVGDFFRQLLRGRYVALLEEEVARLRAENRALTNSLLGTAGFPPVEYPEPARPQSLPRLRKRSWHQIQAWKEAESTKQ
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