Scaffold Ga0209166_10001252

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10001252
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21815
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_1000125216	F000696	GGA	MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVAQADTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFLGAMQDTQIRLRYAKAYPDFTDASSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
Ga0209166_1000125218	F000739	N/A	MNFTRFELWLKGVLAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMSATLRIAAAAALINSVIGVAAYLQKSPLPND
Ga0209166_100012527	F002853	GGAG	MSRAQTQTMNLTDQQLANINAQNQQFLNQQQQTGNLLNSKFQSILNNPGLSAADKAAVTGQSQGAVASAFDSLQQSAANRLARTRNSAGFSALTDELARQKGIAEGNQAQQNQLAFTNTAFQRQMSALQGLSGLFGVDSNLLGRTLGIPSQLLNVRANASRPSPGFFTSLGAGLGSTLGALPSALF
Ga0209166_100012528	F000703	N/A	MQIREYQQSDLAALRAIHAAQGFDYPLPDLRNPLFVTKLILSKSREESDSHQAEPPQEKIVGAALLRLTAEAYLLLDPKAGTPRQRWQWLLALHAATERDAWQRGLEDVHAWLPPPIASKFGKRIETLGWRRDDTWTPYCKRLACTATK
Ga0209166_100012529	F000781	N/A	MLTVAQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTAVASINVQASNGWFDISIADPSDARPGLFYFAESDTTPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPAAVTGGGSTGPTPLPSSGSGALPNGQLRGGNGFGINPGSRITRQTIL