Scaffold Ga0209166_10001217

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10001217
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22157
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_1000121718	F000536	N/A	MVELTPQQMQTLERLFAAGFRPIAIPPYESSLCVKRGECAAVLSPVANGGLKLLASPSYMVAGNLSVRLKRGPAEVFVWKKIELPATPERLQELESFRRELTGILDMPQIQ
Ga0209166_1000121721	F085961	GGAGG	MPVRSTQPPWEFLLSASRNSLQSFELSRLAHASNLRKEITALIDQWMEENAAAMLARWLLEQRERSARAPDMLSSAPPRSNGAHSVSDNFFAERAAAQSENSGPS
Ga0209166_1000121724	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGVSALNWKDTGKFLWRPDFRPRLNEWVADFALAGQQALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRHRCGKELLRRGMFPPRRYFRNES