NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000781

Scaffold Ga0209166_10000781


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000781 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30569
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F006948Metagenome / Metatranscriptome361Y
F039082Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000078113F000207AGGMKKILASIVTTILIVAMTLAAMFILVWATVKVTSLESPLRRAAAMGAELLLGVVLLLGTTWLATHLAVRIFGTKESPSLESSEALAKSSSAGGSGV
Ga0209166_1000078118F039082AGGMFVRTNLPGSRRLDFLRNAAIRTGVYTGVCLSLVFTAWLVIANQVPFLERFAFERNVAGAGVFVFLAAVPVLRFLRWPGNLLASSMIAWVIFTVVYRFLCVIYHGLSDWHSTFQVFMVGAVSYMMFTTLSWIGAIIRRARAAEISHSKPQPRHRES
Ga0209166_1000078130F006948GGAGGVRIKLGHFRWGIAVAGVLAAAVFLAPRAAAQNPDNMMPEQSEAKGKQILRDLIAGLGGPGYTEVRESECSGLRSLFGHSGDLTGYINFTDFRQYPDKARIEYTRKGHNTILLSLIGLDGLDFSHGGIVIALYNGDHAWSYDRTGVNELPVTSVTDFQEATRRNVDTLLRFRLKEPGLSVRFGGSDTVDLRQVDWVEVNDSEGHKYRLAVNRSTHLLDRVVVSTEDAENQQVNDDTTIYSNYQLKDSAWTPMQFTREHNGRRTAQFFLDSCRYNPGFPQDLFSKDSLKTRGAELVSKKK
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