NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000457

Scaffold Ga0209166_10000457


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000457 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45685
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (89.80%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F011165Metagenome / Metatranscriptome294Y
F070346Metagenome / Metatranscriptome123Y
F079922Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000045717F070346GGAGMKPLFSAMSIRWQRLFCFATCGVFIVLVLASLPFLFDLMGRGIGWIMGLFPHPDNLWKECPWCF
Ga0209166_100004572F079922N/AMAKIFYCGGSSGRLDMLRAVIPVAEFSGVLSQENPKYLGKSFPKIKQTGPSCIVIEVVPDEKDGQWRVGFYRAAKGPLEFEGHLRAF
Ga0209166_1000045722F005419AGGAGGMVAAGATEAVGQGKGPEAGSSLRGTRKVRGQTNGVEGQRFFLAKPGGNHGAPEFSKEVPGEPEAMVESLKTGLSYFVVSEWRGVADFSGKKPQLGREAVRNTPKPG
Ga0209166_100004573F011165GAGMQVPWDRFHKAYEEYVCWQAFVLWARAVVELEGCAPSWLEAILRKRCPGFTEEAARSNKPELLGVQLLPWVHNRVFGFAKQEGWLDALVFYGFRDIHAQGYWRYWEHCESEWRKRRPASVPTFAQWKRSALSWKVHGDVGCAVVAKAVEKFIDFEAVVYWLLPLFKAPKVQLPPHVTVELDQQSPSLLEFMRKETSAAYEDKSRSWRRLFNWGKDHVLLHAKKEGWLDCVLRQARIHPRHARLVDYAEIWCNSRRGNTALPYPYLRQWQRDMESCVRASRK
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Institute for Fundamental Biomedical Research
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