Scaffold Ga0209166_10000190

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000190
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79922
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (81.19%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001742	Metagenome / Metatranscriptome	643	Y
F002560	Metagenome / Metatranscriptome	548	Y
F003202	Metagenome / Metatranscriptome	501	Y
F003851	Metagenome / Metatranscriptome	465	Y
F004412	Metagenome / Metatranscriptome	439	Y
F006318	Metagenome / Metatranscriptome	376	Y
F015496	Metagenome / Metatranscriptome	254	Y
F041893	Metagenome / Metatranscriptome	159	Y
F064394	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_1000019017	F003202	GGAGG	MTLRNLAMAILITLVLAAGVGLHNYESARNAAVVRQLSDQLEQTKSELVDATTQLSEANKKLGFLESSKARVQVTAYALTEDFGPDPVFSNNAPAKSAYAVPKHTLPAEKVLNVALSPMAERKLHASLNDTIVLMSGDRARNHLARFVDRTAQTETRSVVDILFADAHEARIWGRRSFFAVNISRPDSPFQQ
Ga0209166_1000019043	F015496	GGAGG	VYNTDLVRKLCCEIAQEKDPEKAQDLMSLLQSVMKDDQEDIRIRMAFLAKKYAFVSDSKAAD
Ga0209166_100001905	F003851	GAGG	MNRRKLAATSSRTSDKNAKRVLRALEDATHGHAIWNDPIVERLKQCPEAFKVGEILGKAFDSLKYAQDGGEVGDRYLPPAGTVIPPLV
Ga0209166_1000019068	F041893	N/A	MSSAPNRSQARRGTRIPCEIPITLTSLDPIHPFSEPCLAILVNPQGCAVRFRRPLEIGAAVRLEGLPARTNVTARVVNSISIGEYEQFWLLGLALDEPGNVWDIKTPPEDWAR
Ga0209166_1000019075	F000208	GAGG	MRIRVTTRADLFEERKQQHIERGYRIEDQRPIPVNGFCSFIAVSEIPDSDRVGDLVAQALNGMAR
Ga0209166_1000019076	F002560	AGGAGG	MVEHNPPPSADSARPPVIPLPVALYVSDELIFELYDGGQPCRSFSIRWERLVPAMENEPEAAPQSSQTGLRTHQD
Ga0209166_1000019080	F004412	AGGA	MENEPSNAEQALPPEQAAAKAAILAECDRLTEAGITFVAVHFDGSGDEGVNEDIKCYATEDYAHEKSEVQVANFSNLQEHFETLVPYGYEDGCGGFGDVILNLKTRKITVERNDRFEDYTTSSYEV
Ga0209166_1000019083	F001742	GAGG	MPDTETGDRRRDRQKIPRIGPEEAARVFAQCEHLLDRSPVFVENLRQVGFARFLAPLHEDILKLAVQPDSWGERTRARLISELFAGLKGIPAEDAPVEEIVRVSNVVVPCFLLELGRRRQHIEINFPANPCDSAARFALRAGRSYPAHSVNSEQLVRLVAEAGEELVGLCYFGDQRSREHIEAQLTFESPTTDS
Ga0209166_1000019094	F064394	N/A	MKHQEQIATVARLRICHAKDQEERLVDALQRWIEDPIKPKTDKGTLRINPILVLLAAVAVLAGGTFLFFSLVQL
Ga0209166_1000019099	F006318	AGGAGG	MWRQPPIWEPQGTKFRPYSIPTLIFFYIGKFFGRLFGHLYGARH