Scaffold Ga0209166

Basic Information
Taxon OID	3300027857 Open in IMG/M
Scaffold ID	Ga0209166_10000153 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209166_10000153 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	91645
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	69 (83.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

91645

Total Scaffold Genes

83 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

69 (83.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F003527	Metagenome / Metatranscriptome	481	Y
F010511	Metagenome / Metatranscriptome	303	Y
F025246	Metagenome / Metatranscriptome	202	Y
F027443	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_1000015318	F000626	AGGAGG	MSIVKKAPGLMSREVKLEEPVNQLLEDYARFIESSPDHVVNCVLKKLWRDQDYRKWRDQRRAAAQAAAGGKDQPVETRGRA
Ga0209166_1000015336	F027443	AGG	MSKPDPYGDWVLFPASEGESKNPSVADNELILAAREVWPRVLAHAKKELNANSLGSDNSSMAAQVWEQMLRSVSKTRQRNTYPRQPIADLQSYLFLAFVHRFNRAVQQEQRHAERIELVSSSVDLERIESAQDVGWVEELERAIAIKEISDRMDGWTRKVWQARQYGYSWKEISTWLGISEQQAKMKFHYGLEKTRQSILRLLKAGKPKRG
Ga0209166_1000015354	F025246	AGGAG	MDLRCPKCNSTDLKKVSLAHEEGLFQNKSRTRLRAVVVGGGGPDIVVGRATTRATEQSALSKRLTPPMKWSYLKVIGWSILVFLCAGWLVFYVNTVATNSSTVWSLPLTFFTLISAAGFALLLFLVWRHNHSAYAQEYARWDRAFICQRCGVVSEQDTRSGQTI
Ga0209166_1000015365	F003527	AGGAG	LSMLKSPPKQPKAVTIQARVEESVKNQLELYAEFIDASPSYVITEALKLLFRKDGDFRCWVDERTNNHNNEKANGKVLAKVV
Ga0209166_100001537	F010511	GGAG	MGLVRVAPSFLRCLVIAAVCFAALPSSKAQTVDVSGSYQCTQAKVQGKVIACTAAPLILKNDGHFELRGWEGSYLVDGQWVELSDSLTKARAKIAPGHKIVLRYYGKHGWTEMTFERRVAELGKTSLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209166_10000153

Overview

Ecosystem & Geography

Associated Families

Sequences