NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000114

Scaffold Ga0209166_10000114


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000114 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104517
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (73.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000536Metagenome / Metatranscriptome1044Y
F001916Metagenome / Metatranscriptome617Y
F021509Metagenome / Metatranscriptome218Y
F085961Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000011443F001916GGAGGLLSDHVISIAGHSITITSHDIFLTGVSIVLGLLFFTLVYFSRKRIVVLRRSGSTDQITYELSRIADALDRIANQPAERAIAAASRRQQQAQMPPPLQRESKGVAFSMFGR
Ga0209166_1000011479F000536N/AMVELTPLQIQTLERLFEAGFRPIAIPPYESAVGVRRGDCAALLSPVANGGLKMLASPSYIVAGNLSVRLKRGQDEVFVWKKTELPATPERLQELESFRQELNSILQMPPTQ
Ga0209166_1000011482F085961GGAGGMVTRPSQPPWEFLLSASRNSLQSFELSRLAHAANLRKEIAAMLDQWLEENAAAMLARWLLEQRERAARAPEVLSAAESRSNGTHSVSDNFLADRGAPRPATGSPI
Ga0209166_1000011485F000188GGGGGMGVKPELAFDVCWEIYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQKALDEPEWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRRRCGKELLLRGMFPPRRYFREGS
Ga0209166_1000011494F021509AGGAGMSSVIPAPSFFEKLTGAIYLDYVLKVAGVGGFVFAFLASWHTLGLGVKFGMLASVSAWLVGSRFTKIYR
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