Scaffold Ga0209166_10000066

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000066
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141571
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (88.97%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003467	Metagenome / Metatranscriptome	485	Y
F009891	Metagenome / Metatranscriptome	311	Y
F025246	Metagenome / Metatranscriptome	202	Y
F027443	Metagenome / Metatranscriptome	194	Y
F034259	Metagenome	175	Y
F046586	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_1000006610	F003467	AGGAG	MIWARYLKLFAKLGLSTLALSALATAGNAQNAYQGKFTLAVETHWEGVTLPAGDYTFALPSNSAPYRLYIWGQGVGAIITAATADQRVVSERPQLNLVDTTVGYTVQTFEAPELGVTFSYLAPTQKHRGQKEARQKTVPQTAPASQASENKTSIEVHTDGR
Ga0209166_10000066104	F025246	GAGG	MDLRCPKCNSTDLKKVSLAYEEGHFRIEARTRLRAVVAGGGGPDLVVGRATTRGTQQSALSKKLTPPVKWSYLKIIGWSALVFLCGCWLVFYVNTVTTNATTVLTAPLTAFALISAAVFVLLLFFVWKHNHSTYQKQFAEWDSSFICQRCGVASLQTGVDA
Ga0209166_1000006669	F009891	AGGAGG	MSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKMLLWKDKHFMNWRKQQQQAARKEVPITATQKSQARA
Ga0209166_1000006685	F027443	AGG	MSKPDPYGDWVLFPADEGQSLNRPAIDDELILAAREVWPRVLVHAKRELNADGLGSESASMAAQVWEQMLRSVSKTRRRNTDPRQPIADLQSYLFLAFVHRFNRAVQQEQKRAERIELVSSSVDLERIESAQDAGWVEELERTIAIREITDRMDPRTKKIWQARQLGYSWKEISLWLGTTEDQARKKFDYGVEKTRQNLVRLLKAGKSKKTG
Ga0209166_1000006691	F046586	AGGTGG	MQTRAPQGQYRVIGLDPIDTLTWPSGPLCKDCETLDEALDLADHNRALYLWVYVYDHAGVLLHETGCHPEQLERIRELNQKPPEGPKTKP
Ga0209166_1000006697	F034259	AGG	LTEIVSKRIDFAKVRRAEGRSLNTAVRELVQLIKPVAQQHGIDFQARLDEASARKSEERRLLAERLQESVVPLFICDRGGRPDRIGSCVLVRLDSDLFAFTAAHVIREAGNARLFAPSEGRGGKLLPLPRCIAHLSSSEIHNDLDVAVLVLSAPQLGPFERRVFLAGTEIDLNDQPDDQGLASFYFVLGYSASRTQVKVSRTERHIHQQSFHCSTNPVDATEYLQEGMSQAHHVLLDFDHKEIVIGGRRVNPPKLQGVSGGGVFHISRETKQGPLVAIATQNRRNSRLIVGTRIKHFLAMVRELKTRQF