Scaffold Ga0209166_10000037

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000037
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 182024
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (75.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000380	Metagenome / Metatranscriptome	1210	Y
F001485	Metagenome / Metatranscriptome	686	Y
F002492	Metagenome / Metatranscriptome	554	Y
F053507	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_10000037108	F002492	AGGA	MKKNSVHKALPSHLAWHSLYQAALFETDRNKIPDRIAEAEEAILERVKELFVANTDHIEEDQVLDDALYALRALRNCVTPEASAA
Ga0209166_1000003716	F000380	GAG	MPTQSQEQETLNVKLVHFTKQNSTDEPVQVAFSVTDDQGKEEIITGEIPYSYELFRVLQENGWLNVRRGVSSIRDTRMPQRRTMSA
Ga0209166_1000003738	F001485	N/A	MEKKIFWMIFAILGLLADFLLPFWWAVAATIPILFIAWWIVYRSDWF
Ga0209166_1000003786	F053507	AGGAG	MKAKMNAKLAIRIAVLTLGMVGAFLAAGVQPFASASDGGPLILCKPGTTNCQSTLPPMNS