Scaffold Ga0209166_10000031

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000031
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199940
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (79.23%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F000138	Metagenome / Metatranscriptome	1954	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F013792	Metagenome / Metatranscriptome	268	Y
F024219	Metagenome / Metatranscriptome	207	Y
F037898	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_10000031166	F000138	AGGAG	MHMQLMNSFRVPWGTLISYIPVIATIVTTFFSIILARATLRYVEATDKGLALAREEFEREWTPDLHIKMERVSSEEARVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGMTWSAEMGKRILACTGYDFEGPIAAAMTFYASGRMFRTDWFRAQVQVREGRIVSLEPSTMPTRRVRQMERKAPERRREFVQDVAANGEPEPVQDKPDKKDESFFVTGA
Ga0209166_10000031176	F037898	AGGAGG	MLSFYRSLLYLYPSPYRREYADEMISVFRDAQAEVSAGSFVKRISFRVRESAGLLAGALQEHLRLLGGNYPLISLRRFAMRPEFRFPRSTIFLMSIIFAGVILAMEKANTIMVKYAAGVGSIWPSLPWFLGFTLLFTGAAAMAVWGVLFALRRTGVHRLANIQPGTNRAD
Ga0209166_1000003122	F013792	GGA	MSDHDSLTKRLCQVSPYAGRIEPFIDLIPEIMERNDQLRPLWTAWRQNATPDLTPGQYFNRREIKVLREFVKYLYFASDAFARSARRGR
Ga0209166_1000003127	F000131	GGA	MGSFSVVPSEKMRRILRSGWLQIFVSFVFVSLPVRAQVVTLQSLVTPSTVISKDGKLLLFSVHGFIEFRSLSELFPYIDSQEQRWRPSLEPTALTALRRDLLMRGIESRVVSMIDERPLETLSTHTRVELEQALKQVKEPIPEGYAQAFLAVQDKWKHSLNCWSAAPSIPARVLSNWYPIEEGISLYGATYDSTEHFWQAVKYHPDVKVAEVIALLDLMRERDWSPWLKRLDDDPKLYLPNAYAVEFLRHNLEHERLRWFAEEISRQKVSPDERVRTLQQRATTPFRFSAYEEKVLWGDLADVFQLVYQFSPDGDPIRKTLAEHHFDGIYLEDRKMGFISEDFRSLMLEIWKVKYLQMARFGVVIRSIPLEIHLSHFLNDGDSPDIPIPVYIDYLNQIRQMALAASDKINHPAK
Ga0209166_1000003141	F000414	AGGAG	MSAPSRRPEIRRRRTRKEKIVQLRKRLAAAKTDADRTRLTAKLHKLAVLSPGQPLLK
Ga0209166_1000003192	F024219	AGG	VSSVRVLKNNQRVALVRVEYKEPAELPQGGPFVEMRARVRFSCSSGQATPTSEWFYSRDHTGRFVVSKKAAHDDQFGKAPEGNFADLVSKAVCSQSK