NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000007

Scaffold Ga0209166_10000007


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000007 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)350617
Total Scaffold Genes311 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)233 (74.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000391Metagenome / Metatranscriptome1196Y
F000749Metagenome / Metatranscriptome908Y
F001102Metagenome / Metatranscriptome777Y
F004015Metagenome / Metatranscriptome457Y
F011701Metagenome / Metatranscriptome288Y
F019706Metagenome / Metatranscriptome228Y
F025582Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_10000007106F000749AGGAGMKSRNTKPRVAPQITIRVSGKLFQGHLAYLEQLVQSASECQLWPLLNLAQLEELDRDALFYLIDGEDRQFAIISCPAFIRDWMDHERARAAA
Ga0209166_1000000712F001102AGGAGMQSGSKQLNAARLKADLAAACVELLSAQCAMDRVRLQYSPRDIVAFAERSAVKKAVASAEALCRFFSQIEAHIKHREEAPG
Ga0209166_10000007181F025582AGGAGMPIIQVEKKQSRTQIKAAIENDVQEALRAYCRFSGATNDQVVSGALKFLFQSDGEFKPWYELHKNDSQPRRGPRRRVPTDQNHNGNIQSSDKSLPMSASKK
Ga0209166_10000007305F004015GAGGMAIFYRGSRQDVYNILWAVVFGFATLNILSLTARRMEPARRGLAFGEVMAVGVVVIAASLLGWEMLSLMHIFPIHLKR
Ga0209166_1000000740F011701GGAGGMDCRRNSRAWLVSTLLITLLFVTVAASSSRGREFSGYFDVSQVRPEGDLVQATLHLRLFNHSDADAKSVIVTLIDSSPSMTFRGNFHPVKVWKSHQFLEMSQEFTVTKREFHEWMAPPAQPNLVILFQDAKGTTWQRGAQISRRPLVPAQQ
Ga0209166_1000000769F000391GGAGGMTTEPQLSESPYCVKIETANGQSSTVPIAFLTSKQLEVFLQTEFKRLAEEAGVKGARLHVERAVAADYDQVLREVSACLQSAKKRAA
Ga0209166_1000000772F019706GGTGGMNIPMPVLPLAIRIPGAEKKKRVLLLDTSSHKRDLRAEIMRKLGMEVDCAADIAEARSWWRADLYDLVLINMEKGRGHRDRFCDDLRGATPPQRLAFLVGEPAYLASLPIEDDQFLLQNAGRQVLIGDLKAALSSDPNANQRWGILEASRRISAVRSTCNARTTAMRDRPAPPRDADARPSRSAGPPTTLDDLLREEMQ
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